PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g013410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 205aa    MW: 22836.4 Da    PI: 10.6154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g013410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-103783354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h  +Er+RR+riNs +++L++l P +     +K +K  +L++Av  +k+L
  Sopen00g013410.1 37 VTHAVAERKRRERINSHLHTLKKLFPYL-----PKKDKPRVLTEAVTQLKEL 83
                      68*************************8.....6999999***999988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-122591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4463483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-83783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-73788No hitNo description
Gene3DG3DSA:4.10.280.102.5E-103891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-74089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-4122186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLSSLQGCNN GFLQLVDHQK NEKSNTTKKS KSKDAAVTHA VAERKRRERI NSHLHTLKKL  60
FPYLPKKDKP RVLTEAVTQL KELRKNVAQQ LELSSLFIPS ENDVVIINYC DNINEERTVK  120
TTICCEDRPS LNRDLSSAIR SVQGRVIKVE MATVGGRTKA ELVVVLGKAN GGEKDVGQLK  180
RALKAVVENR ALGFGSNVML GRRFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686380.0CU468638.8 S.lycopersicum DNA sequence from clone LE_HBa-272I8 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238538.11e-145PREDICTED: putative transcription factor bHLH107
TrEMBLK4BU621e-145K4BU62_SOLLC; Uncharacterized protein
STRINGSolyc04g076240.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-31bHLH family protein